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Control files for CIP |
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The controle files (CTRL)
Control files are text files used to manage the file names of the input and output files for CIP:
- y.ctrlA - for CIP1A
- y.ctrlB - for CIP1B
- y.ctrl2 - for CIP2
- y.ctrl4 - for CIP4
The files provided here may be used as prototypes.
Using copy / paste the proper file names may be substituted.
A set of control files can be downloaded here: → ctrl.tar.gz
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cip---------INPUT----------
1) Title of problem
213mn 4 tilts 10x Fiji matched cirpol pre-corrected
2a) x- and y dimension
1300,1000
2b) 2 tilts:“2,012”=soft-EUP-SUP,“2,134”=stiff-WUP-NUP,etc., 4 tilts:“4,0”=soft,“4,1”=stiff
4,1
2c) Corrections ROT-bg,TILT-bg,FLARE,cirpol-camera? (0=don't 1=do)
1,1,1,1
2d) Reference direction for misorientation (N=0,90 E=90,90)
45,52
3) Rotation images (Number = N$ROT):
at 10 degrees
input/213mn.010
at 20 degrees
input/213mn.020
at 30 degrees
input/213mn.030
at 40 degrees
input/213mn.040
at 50 degrees
input/213mn.050
at 60 degrees
input/213mn.060
at 70 degrees
input/213mn.070
at 80 degrees
input/213mn.080
at 90 degrees
input/213mn.090
at 100 degrees
input/213mn.100
at 110 degrees
input/213mn.110
at 120 degrees
input/213mn.120
at 130 degrees
input/213mn.130
at 140 degrees
input/213mn.140
at 150 degrees
input/213mn.150
at 160 degrees
input/213mn.160
at 170 degrees
input/213mn.170
at 180 degrees
input/213mn.180
4a) Tilt images (Number = N$TILT):
First East up
input/213mn.eup
Second South up
input/213mn.sup
Third West up
input/213mn.wup
Fourth North up
input/213mn.nup
4b) Use CirPOL (=N$INCPOL=2) or AMPlitude (=N$INCAMP=3)
2
5) Circular polarisation (Number = 1):
input/213mn.cirpol
6a) Background for ROT etc. images
input/213mn.backR
6b) Background for TILT images
input/213mn.backT
7) Calibration of program and camera
../../calib/axio-micro-660-700.CAL
8) Calibration of inclination
../../calib/incA-incP-20-lin-660-700.LUT
9) Stereographic Colour Lookup Table
../../clut/CIP-P-standard.CLUT
cip---------CIP1results----------
1) Primary result files
max value
CIP1A/213mn.MAX
min value
CIP1A/213mn.MIN
phase of max
CIP1A/213mn.FMAX
tilt indicator
CIP1A/213mn.Tindex
error
CIP1A/213mn.ERR
2) Final result files
azi
CIP1A/213mn.AZI
inc from polarization
CIP1A/213mn.INCP
inc from amplitude
CIP1A/213mn.INCA
edges from polarization
CIP1A/213mn.EDGP
edges from amplitude
CIP1A/213mn.EDGA
absolute misorientation from North (0,90)
CIP1A/213mn.MISN
absolute misorientation from East (90,90)
CIP1A/213mn.MISE
absolute misorientation from UP (0,0)
CIP1A/213mn.MISH
absolute misorientation from ref.direction
CIP1A/213mn.MIS-45-52
3) c-axis orientation image (NON-INTERLEAVED)
CIP1A/213mn.COI1A.raw
4) histogram of azi/dip (5° boxes) as from MENTEX -> INVPIMA
CIP1A/213mn.CPF
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Controle file (.CTRLA)
Used to control input / output of CIP1A
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cip---------INPUT----------
1) Title of problem
213mn 4 tilts 10x Fiji matched cirpol pre-corrected
2a) x- and y dimension
1300,1000
2b) 2 tilts:“2,012”=soft-EUP-SUP,“2,134”=stiff-WUP-NUP,etc., 4 tilts:“4,0”=soft,“4,1”=stiff
4,1
2c) Corrections ROT-bg,TILT-bg,FLARE,cirpol-camera? (0=don't 1=do)
1,1,1,1
2d) Reference direction for misorientation (N=0,90 E=90,90)
45,52
3) azi image:
CIP1A/213mn.AZI
4) inc0 images (0-90):
CIP1A/213mn.INCP
5) T-index file (switch where GV > 0):
CIP1A/213mn.Tindex
7) Calibration of program and camera
../../calib/axio-micro-660-700.CAL
8) Calibration of inclination
../../calib/incA-incP-20-lin-660-700.LUT
9) Stereographic Colour Lookup Table
../../clut/CIP-P-standard.CLUT
cip---------CIP1results----------
1) Final result files
CIP1B/213mn.INC
2) c-axis orientation image (NON-INTERLEAVED)
CIP1B/213mn.COI1B.raw
3) histogram of azi/dip (5° boxes) as from MENTEX -> INVPIMA
CIP1B/213mn.CPF
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Controle file (.CTRLB)
Used to control input / output of CIP1B
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cip---------INPUT----------
1) Title of problem
213mn 4 tilts 10x Fiji matched cirpol pre-corrected
2a) x- and y dimension
1300,1000
3) Reference direction for misorientation (N=0,90 E=90,90)
45,90
4) Masking for pole figure and orientation image ? (1=yes, 0=no)
0
5) Want misorientation, edge and orientation image ? (1=yes, 0=no)
1,1,1
6) Pole figure correction 1=sin(inc) 2=sin(inc-1/2) 3=-5°-95° 4=sqrt(), 5=sin(delta)
1
7) Stereographic Colour Lookup Table
../../clut/CIP-P-spectrum.CLUT
cip---------INPUT FILES----------
1) azimuth file
CIP1A/213mn.azi
2) inclination file
CIP1B/213mn.inc
3) masking file (0 where o.k. >0 where masked) ( different from CIP1 !!!)
input/213mn.mask
cip---------OUTPUT IMAGES----------
1) edges using 2 neighbours ( different from CIP1 !!!)
CIP2/213mn.EDG2s
2) edges using 4 neighbours ( different from CIP1 !!!)
CIP2/213mn.EDG4a
3) absolute misorientation from North (0,90)
CIP2/213mn.MISN2
4) absolute misorientation from East (90,90)
CIP2/213mn.MISE2
5) absolute misorientation from UP (0,0)
CIP2/213mn.MISH2
6) absolute misorientation from ref.direction
CIP2/213mn.MIS-45-90
7) c-axis orientation image (NON-INTERLEAVED)
CIP2/213mn.COI2.raw
8) histogram of azi/dip (5° boxes) as from MENTEX -> INVPIMA
CIP2/213mn.CPF2
9) pole figure image (36*36) -> Lazy Pole
CIP2/213mn.PFIG2
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Controle file (.CTRL2)
Used to control input / output of CIP2
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cip---------INPUT----------
1) Title of problem
213mn 4 tilts 10x Fiji matched cirpol pre-corrected
2a) x- and y dimension
1300,1000
3) 4 reference directions for misorientation (N=0,90 E=90,90)
45,52,135,52,45,128,135,128
4) Masking for pole figure and orientation image ? (1=yes, 0=no)
0
5) Want misorientation, edge and orientation image ? (1=yes, 0=no)
0,0,1
6) Pole figure correction 1=sin(inc) 2=sin(inc-1/2) 3=-5°-95° 4=sqrt(), 5=sin(delta)
1
7) Stereographic Colour Lookup Table
../../clut/qtz20-gold.POL
cip---------INPUT FILES----------
1) azimuth file
CIP1A/213mn.AZI
2) inclination file
CIP1B/213mn.INC
3) masking file (0 where o.k. >0 where masked) ( different from CIP1 !!!)
input/213mn.mask
cip---------OUTPUT IMAGES----------
1) edges using 8 neighbours average ( different from CIP1 !!!)
CIP4/213mn.EDG8a
2) edges using 8 neighbours max ( different from CIP1 !!!)
CIP4/213mn.EDG8m
3) absolute misorientation from North (0,90)
CIP4/213mn.MISr1_045_052
4) absolute misorientation from East (90,90)
CIP4/213mn.MISr2_135_052
5) absolute misorientation from UP (0,0)
CIP4/213mn.MISr3_045_128
6) absolute misorientation from ref.direction
CIP4/213mn.MISr4_135_128
7) c-axis orientation image (NON-INTERLEAVED)
CIP4/213mn.COI4.raw
8) histogram of azi/dip (5° boxes) as from MENTEX -> INVPIMA
CIP4/213mn.CPF4
9) pole figure image (36*36) -> Lazy Pole
CIP4/213mn.PFIG4
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Controle file (.CTRL4)
Used to control input / output of CIP4
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